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HADDOCK (High Ambiguity Driven protein-protein DOCKing) is an information-driven flexible docking approach for the modeling of biomolecular complexes.
HADDOCK is one of the flagship software in the EU H2020 BioExcel Center of Excellence for Biomolecular Research . HADDOCK online (setup your run): ... HADDOCK: a protein-protein docking approach based on biochemical and/or biophysical information. J. Am. Chem. Soc. 125, 1731-1737 (2003).
This tutorial will demonstrate the use of HADDOCK for predicting the structure of a protein-protein complex from NMR chemical shift perturbation (CSP) data. Namely, we will dock two E. coli proteins involved in glucose transport: the glucose-specific enzyme IIA (E2A) and the histidine-containing phosphocarrier protein (HPr).
haddock v3: The High Ambiguity Driven biomolecular DOCKing is our flagship software, it is an integrative platform for modelling biomolecular complexes. It is one of the most popular software for protein-protein and protein-ligand docking.
21 Ιαν 2003 · Here, we present an approach called HADDOCK (High Ambiguity Driven protein−protein Docking) that makes use of biochemical and/or biophysical interaction data such as chemical shift perturbation data resulting from NMR titration experiments or mutagenesis data.
This example is the result of running our Basic Protein-Protein Docking Tutorial. HADDOCK best practices guide. The best practice guide shows how to run HADDOCK in a sensible and rational manner. Which settings are best used in which scenario and which on the other hand are better avoided? User forum.
HADDOCK is an integrative platform for the modeling of biomolecular complexes. It supports a large variety of input data and can deal multi-component assembles of proteins, peptide, small molecules and nucleic acids. Go to service.
