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PHYLIP is a comprehensive software tool package for phylogenetic analyses. The PHYLIP package includes tools to infer evolutionary trees (phylogenies), parsimony, distance matrix, likelihood, bootstrapping, consensus trees, and discrete characters.
phyloT generates phylogenetic trees based on the NCBI taxonomy or Genome Taxonomy Database. From a list of taxonomic names, identifiers or protein accessions, phyloT will generate a pruned tree in the selected output format.
27 Ιουν 2024 · Key features. Efficient search algorithm: Fast and effective stochastic algorithm to reconstruct phylogenetic trees by maximum likelihood. IQ-TREE compares favorably to RAxML and PhyML in terms of likelihood while requiring similar amount of computing time (Nguyen et al., 2015).
Interactive Tree Of Life is an online tool for the display, annotation and management of phylogenetic and other trees. Manage and visualize your trees directly in the browser, and annotate them with various datasets.
The iPhylo Visual interactively facilitate the display, annotation, and inspection of tree-based structures, including but not limited to phylogenetic and chemical taxonomic trees.
Bootstrapping Phylogenetic Trees. This example shows how to generate bootstrap replicates of DNA sequences. The data generated by bootstrapping is used to estimate the confidence of the branches in a phylogenetic tree.
1 Σεπ 2016 · Molecular Evolutionary Genetics Analysis (MEGA) software is a free package that lets anyone build evolutionary trees in a user-friendly setup.
