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describing more than 159 plant promoters ... Submitting a sequence to a program which will look for transcription sites known by PlantCARE PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences Magali Lescot, Patrice D hais, Gert Thijs, Kathleen Marchal, ...
This resource is designed to provide an overview and a brief evaluation of various bioinformatics tools useful for promoter analysis and cis-element searches for beginners like us. The emphasis is to explore useful tools for the analysis of Arabidopsis gene promoters.
promoter sequences of genes from a given gene cluster (2). The knowledge on plant promoters is of major interest in biotechnology and will offer the possibility to control gene expression in many areas. Here, we describe the present status of the PlantCARE database (3), its content and analysis tools that are currently available.
1 Ιαν 2002 · The knowledge on plant promoters is of major interest in biotechnology and will offer the possibility to control gene expression in many areas. Here, we describe the present status of the PlantCARE database , its content and analysis tools that are currently available. DATABASE STATUS AND AVAILABILITY
A database-assisted system, PlantPAN (Plant Promoter Analysis Navigator), for recognizing combinatorial cis-regulatory elements with a distance constraint in sets of plant genes and enables other regulatory features in a plant promoter, such as CpG/CpNpG islands and tandem repeats, to be displayed.
1 Ιαν 2002 · PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Regulatory elements are represented by positional matrices, consensus sequences and individual sites on particular promoter sequences.
1 Ιαν 2002 · AB - PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Regulatory elements are represented by positional matrices, consensus sequences and individual sites on particular promoter sequences. Links to the EMBL, TRANSFAC and MEDLINE databases are provided when available.
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