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PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences Magali Lescot , Patrice D hais, Gert Thijs, Kathleen Marchal, Yves Moreau, Yves Van de Peer, Pierre Rouz and Stephane Rombauts
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VIB Data means the DNA sequence information, VIB’s...
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This resource is designed to provide an overview and a brief evaluation of various bioinformatics tools useful for promoter analysis and cis-element searches for beginners like us. The emphasis is to explore useful tools for the analysis of Arabidopsis gene promoters.
27 Σεπ 2024 · With PlantCARE, a powerful tool for this purpose, users can efficiently identify and characterize these elements. This guide outlines the steps necessary to utilize PlantCARE for analyzing promoter regions. The first step involves collecting nucleotide sequences of interest.
PhagePromoter - is a tool for locating promoters in phage genomes, using machine learning methods. This is the first online tool for predicting promoters that uses phage promoter data and the first to identify both host and phage promoters with different motifs.
Defines a promoter model based on composition of transcription factor binding sites and their pairs. Adjusts the results of the fitness function using a genetic algorithm for the analysis of functionally related or coexpressed genes.
promoter sequences of genes from a given gene cluster (2). The knowledge on plant promoters is of major interest in biotechnology and will offer the possibility to control gene expression in many areas. Here, we describe the present status of the PlantCARE database (3), its content and analysis tools that are currently available.
1 Ιαν 2002 · PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Regulatory elements are represented by positional matrices, consensus sequences and individual sites on particular promoter sequences.
