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This form allows you to assemble a set of contiguous sequences (contigs) with the CAP3 program. If you use CAP3 in any published work, please cite the following reference: Huang, X. and Madan, A. (1999) CAP3: A DNA sequence assembly program.
CAP3 differs from the other assembly programs in use of constraints to construct contigs and use of quality values to construct multiple sequence alignments. Below, we compare the CAP3 and PHRAP approaches to generation of consensus sequences for contigs.
20 Αυγ 2012 · CAP3 is a DNA sequence assembly program that uses forward–reverse constraints in order to correct assembly errors and link contigs. The program can be used for processing DNA sequences and to ...
1 Σεπ 1999 · We describe the third generation of the CAP sequence assembly program. The CAP3 program includes a number of improvements and new features. The program has a capability to clip 5' and 3' low-quality regions of reads.
Input to CAP3. CAP3 takes as input a file of sequence reads in FASTA format. If the names of reads contain a dot ('.'), CAP3 requires that the names of reads sequenced from the same subclone contain the same substring up to the first dot.
26 Ιουλ 2019 · CAP3 computes clipping positions of each read using both base quality values and similarity information. Clipping of a poor end region of a read f is controlled by three parameters: quality value cutoff qualcut, clipping range crange, and depth of good coverage gdepth.
CAP3 computes clipping positions of each read using both base quality values and similarity information. Clipping of a poor end region of a read f is controlled by three parameters: quality value cutoff qualcut, clipping range crange, and depth of good coverage gdepth.
CAP3 - CAP3 (Contig Assembly Program) is a DNA sequence assembly program for small-scale assembly with or without quality values.. BioQueue Encyclopedia provides details on the parameters, options, and curated usage examples for CAP3.
We describe the third generation of the CAP sequence assembly program. The CAP3 program includes a number of improvements and new features. The program has a capability to clip 5' and 3' low-quality regions of reads.
The PRABI-Doua is devoted to bioinformatics tools available on-line or as downloadable software. Those tools are devoted to various research fields such as molecular evolution, phylogeny, comparative genomics, sequence databases and statistics in ecology.
