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As a matter of improving your code, you can simplify this dramatically as you don't need a loop if you are provided a vector of class frequencies. For example: # calculate shannon-entropy -sum(freqs * log2(freqs)) [1] 0.940286
The entropy function allows to estimate entropy from observed counts by a variety of methods: method="ML":maximum likelihood, see entropy.empirical. method="MM":bias-corrected maximum likelihood, see entropy.MillerMadow. method="Jeffreys": entropy.Dirichlet with a=1/2. method="Laplace": entropy.Dirichlet with a=1.
Description. Computes Shannon entropy and the mutual information of two variables. The entropy quantifies the expected value of the information contained in a vector. The mutual information is a quantity that measures the mutual dependence of the two random variables. Usage. Entropy(x, y = NULL, base = 2, ...) MutInf(x, y, base = 2, ...) Value.
7 Φεβ 2016 · when I calculate entropy for attribute B the result give me NaN that is due to zero (0) (log2 (0) is error ) . in such situation how can I fix this error or how can make H1 give me zero instead of NaN. ifelse(is.na(entropy), 0, entropy) should work. There is a package called 'entropy' in r if it works for you.
entropy is an R package that provides tools for estimating entropy, mutual information, and related quantities. These are fundamental concepts in information theory and have applications in various fields including statistics, machine learning, and data analysis.
Implements various estimators of entropy for discrete random variables, including the shrinkage estimator by Hausser and Strimmer (2009), the maximum likelihood and the Millow-Madow estimator, various Bayesian estimators, and the Chao-Shen estimator.
How is the entropy calculated by the `entropy` package in R? Ask Question. Asked 9 years, 3 months ago. Modified 7 years, 7 months ago. Viewed 5k times. 3. So, as per the docs, I'm calling the function like this. v = c(0,4,3,6,7,3,2,3,4,5) entropy(discretize(v, numBins = 8, r = c(0,7))) and I get. [1] 1.834372. jolly good.
