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  1. There are four main choices of how to define axes, each with associated Axis Parameters: Each helix in structure – define an axis for each peptide/protein helix in the atomic model(s) chosen in the list of Structures .

  2. By selecting the proper initial displacement and initial velocity, we can set the ball in oscillation along either the $x$-axis or the $y$-axis, or along any straight line in the $xy$-plane. These motions of the ball are analogous to the oscillations of the electric field vector illustrated in Fig. 33–1 .

  3. We can always define the direction as where k points. When we put a hat on a vector, it means the unit vector pointing in that direction, that is zˆ = (0, 0, 1). Thus the electric field has the form E0eiω. z E = −t. c. (5) which moves in the z direction at the speed of light.

  4. Left-Hand Circularly Polarized Wave in Space. If one takes a snapshot of a left-hand circularly E polarized wave at any instant, then he will see the following picture. direction of propagation. λ. The H-field at each point is orthogonal to the E-field.

  5. A beam linearly polarized along the x-axis and traveling in the positive z-direction can be represented by: E(z,t)=E0xöcos(kz"!t) (4.3) where xö is the unit vector along the x-axis. Of course, the choice of coordinate system is completely arbitrary. If we have a second coordinate system rotated by an angle θ, about the z-

  6. If the wave propagates along the zaxis with electric field components along both the x- and y-axis, the wave can be decomposed into the two polarization components. During propaga-tion of the wave the will experience a differential phase shift with respect to each other and the state of polarization may change.

  7. We describe the polarization of a light wave (without any interface nearby) according to how the E-field vector varies in a projection onto. a plane perpendicular to the propagation direction. For convenience, the propagation direction along the positive z axis. Here are two possibilities:

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