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HADDOCK (High Ambiguity Driven protein-protein DOCKing) is an information-driven flexible docking approach for the modeling of biomolecular complexes. HADDOCK distinguishes itself from ab-initio docking methods in the fact that it encodes information from identified or predicted protein interfaces in ambiguous interaction restraints (AIRs) to ...
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This tutorial will demonstrate the use of HADDOCK for predicting the structure of a protein-protein complex from NMR chemical shift perturbation (CSP) data. Namely, we will dock two E. coli proteins involved in glucose transport: the glucose-specific enzyme IIA (E2A) and the histidine-containing phosphocarrier protein (HPr).
With the protein and DNA starting structures available and the Ambiguous Interaction Restraints setup, you can start setting up your docking using the HADDOCK web server. This part will introduce you to the use of the HADDOCK web server for the docking of protein-DNA systems.
haddock v3: The High Ambiguity Driven biomolecular DOCKing is our flagship software, it is an integrative platform for modelling biomolecular complexes. It is one of the most popular software for protein-protein and protein-ligand docking.
Overview: This tutorial will demonstrate the use of HADDOCK for predicting the structure of a protein-protein complex from NMR chemical shift perturbation (CSP) data. Namely, you will dock two E. coli proteins involved in glucose transport: the glucose-specific enzyme IIA (E2A) and the histidine-containing phosphocarrier protein (HPr).
17 Μαΐ 2017 · Abstract. Protein–protein and protein–DNA/RNA interactions play a fundamental role in a variety of biological processes. Determining the complex structures of these interactions is valuable, in which molecular docking has played an important role.
