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HADDOCK (High Ambiguity Driven protein-protein DOCKing) is an information-driven flexible docking approach for the modeling of biomolecular complexes. HADDOCK distinguishes itself from ab-initio docking methods in the fact that it encodes information from identified or predicted protein interfaces in ambiguous interaction restraints (AIRs) to ...
HADDOCK basic protein-protein docking tutorial. This tutorial consists of the following sections: Introduction. Setup. HADDOCK general concepts. Inspecting and preparing E2A for docking. Inspecting and preparing HPR for docking. Adding a phosphate group. Setting up the docking run.
Phone: +31-30-2533859. Fax: +31-30-2537623. HADDOCK is one of the flagship software in the EU H2020 BioExcel Center of Excellence for Biomolecular Research. HADDOCK online (setup your run): https://www.bonvinlab.org/software/haddock2.2/haddock-start.
HADDOCK2.4 basic protein-protein docking tutorial: A tutorial demonstrating the use of the HADDOCK web server to model a protein-protein complex using interface information derived from NMR chemical shift perturbation data.
8 Ιουλ 2021 · HADDOCK2.4 web server (https://bianca.science.uu.nl/haddock2.4/) [1] is used for protein-protein docking and their modeling. Not only proteins, but it can also process peptides, small molecules, and nucleic acids. In this article, we are going to perform protein-protein docking.
haddock v3: The High Ambiguity Driven biomolecular DOCKing is our flagship software, it is an integrative platform for modelling biomolecular complexes. It is one of the most popular software for protein-protein and protein-ligand docking. pdb-tools: A dependency-free cross-platform swiss army knife for PDB files.
18 Οκτ 2024 · Description: This tutorial will demonstrate the use of HADDOCK for predicting the structure of a protein-protein complex from NMR chemical shift perturbation (CSP) data. Namely, we will dock two E. coli proteins involved in glucose transport: the glucose-specific enzyme IIA (E2A) and the histidine-containing phosphocarrier protein (HPr).
