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Primer-blast tries to find target-specific primers by placing candidate primers on unique template regions that are not similar to other targets.
- Primer-BLAST
Maximum number of database sequences (with unique sequence...
- Tips for Finding Specific Primers
The reason is that an accession or GI carries accurate...
- Primer-BLAST Help
Primer-BLAST Results Help. Primer-BLAST was developed at...
- Primer-BLAST
Primer-BLAST Results Help. Primer-BLAST was developed at NCBI to help users make primers that are specific to intended PCR target. It uses Primer3 to design PCR primers and then uses BLAST and global alignment algorithm to screen primers against user-selected database in order to avoid primer pairs (all combinations including forward-reverse ...
18 Ιουν 2012 · The Primer-BLAST program was implemented using the NCBI C++ toolkit and the Primer3 C programming interface, which recently added the capability to target primers to one or more specified regions as well as between specified bases (for splice site specification).
4 Φεβ 2022 · NCBI's Primer-BLAST combines the primer design features of the popular Primer3 package with a specificity check that uses nucleotide BLAST to search for target and non-target matches in a background database.
22 Σεπ 2023 · Primer-BLAST is a combination of Primer3, a popular primer designing tool, and NCBI BLAST. Primer-BLAST has two basic modes. Design primers to specifically amplify a template sequence or a set of related templates from a background nucleic acid population (BLAST database).
Practice Primer-BLAST Examples. We'll cover three main examples today and explore options and addional related resources. We'll use Primer-BLAST to design primers for: A human transcript from the myeloperoxidase (MPO) gene and use the exon/intron selection to make them specific for the transcript.
Go to the Primer BLAST submission form. Enter the target sequence in FASTA format or an accession number of an NCBI nucleotide sequence in the PCR Template section of the form. If the NCBI mRNA reference sequence accession number is used, the tool will automatically design primers that are specific to that splice variant. If one or both primer ...
