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This form allows you to assemble a set of contiguous sequences (contigs) with the CAP3 program. If you use CAP3 in any published work, please cite the following reference: Huang, X. and Madan, A. (1999) CAP3: A DNA sequence assembly program.
- Software and Packages
The PRABI-Doua is devoted to bioinformatics tools available...
- Software and Packages
Comprehensive set of protein domain families. Enzyme-specific profiles for metabolic metabolic pathway prediction. Database of homologous genes from fully sequenced organisms, including all bacteria and archae. Viral evolution and virus/host co-evolution.
LalnView can be used through the PRABI-Doua server to compare nucleic acid sequences, or through the ExPASy server for protein sequences. Sequences can be entered by the user or extracted from SWISS-PROT, GenBank or EMBL databases.
1 Σεπ 1999 · We describe the third generation of the CAP sequence assembly program. The CAP3 program includes a number of improvements and new features. The program has a capability to clip 5' and 3' low-quality regions of reads.
CAP3 Sequence Assembly Program Enter your sequences in FASTAformat (no more than 50 kb): This form allows you to assemble a set of contiguous sequences (contigs) with the CAP3program.
The PRABI platform is part of the National Bioinformatics Network (RENABI). It comprises two components: PRABI-Doua and PRABI-Analysis and data modelling, both of which specialise in the analysis of genomic, transcriptomic and metagenomics data, with a strong emphasis on the ecology and evolutionary aspects.
1 Σεπ 1999 · CAP3: A DNA sequence assembly program. The third generation of the CAP sequence assembly program is described, which has a capability to clip 5' and 3' low-quality regions of reads and uses forward-reverse constraints to correct assembly errors and link contigs. PCAP: a whole-genome assembly program.
