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EMBOSS Needle reads two input sequences and writes their optimal global sequence alignment to file.
- Clustal Omega < EMBL-EBI
Clustal Omega is a new multiple sequence alignment program...
- Aligning multiple protein sequences | UniProt - EMBL-EBI
A sequence alignment is a way of arranging the primary...
- Clustal Omega < EMBL-EBI
Clustal Omega is a new multiple sequence alignment program that uses seeded guide trees and HMM profile-profile techniques to generate alignments between three or more sequences. For the alignment of two sequences please instead use our pairwise sequence alignment tools.
BlastP simply compares a protein query to a protein database. PSI-BLAST allows the user to build a PSSM (position-specific scoring matrix) using the results of the first BlastP run. PHI-BLAST performs the search but limits alignments to those that match a pattern in the query.
SIM is a program which finds a user-defined number of best non-intersecting alignments between two protein sequences or within a sequence . Once the alignment is computed, you can view it using LALNVIEW, a graphical viewer program for pairwise alignments [reference to LANVIEW].
15 Δεκ 2022 · Sequence alignment is a key component of bioinformatics pipelines to study the structures and functions of proteins, and to annotate open reading frames in newly sequenced genomes and...
A sequence alignment is a way of arranging the primary sequences of a protein to identify regions of similarity that may be a consequence of functional, structural, or evolutionary relationships between the sequences.
COBALT is a multiple sequence alignment tool that finds a collection of pairwise constraints derived from conserved domain database, protein motif database, and sequence similarity, using RPS-BLAST, BLASTP, and PHI-BLAST.
