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  1. Clustal Omega is a tool that aligns three or more sequences using seeded guide trees and HMM profile-profile techniques. It can handle up to 4000 sequences or 4 MB files and supports protein, DNA and RNA inputs.

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      The Job Dispatcher at EMBL-EBI offers free access to a range...

  2. 1 ημέρα πριν · Use VectorBuilder's free sequence alignment tool to identify regions of similarity between any two DNA or protein sequences of your interest.

  3. Job Dispatcher offers free access to various sequence analysis tools and biological datasets through web and programmatic interfaces. You can perform pairwise or multiple sequence alignment, sequence similarity search, sequence translation, phylogeny, and more.

  4. CLUSTALW is a web-based tool for aligning multiple protein or DNA sequences. It offers various parameters, formats, and options for pairwise and multiple alignment algorithms.

  5. Jalview is a cross-platform tool for editing, visualising and analysing multiple sequence alignments, phylogenetic trees and molecular structures. It supports DNA, RNA and protein sequences and structures, and integrates with Jmol, VARNA and ChimeraX.

  6. The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance of matches.

  7. SIM computes non-intersecting alignments between two or more protein sequences and allows viewing them with LALNVIEW. Enter UniProtKB AC/ID or protein sequence in single letter code and adjust parameters.

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